SwissBIAS Annual Meeting 2025
Morning Session
| Starts at | Who | What |
|---|---|---|
| 10:30 | Micheal Doube, bonej.org | Monetising research software |
| 10:50 | Romain Guiet, EPFL | Using Gitlab as Users’s Projects Management Tool |
| 11:10 | Joel Lüthi, BioVisionCenter | Learning from 2024 OME-NGFF workflows |
| 11:30 | Break | |
| 11:50 | Mallory Wittwer, EPFL | A Lightweight Toolkit for Deploying Image Analysis Algorithms as Web Services |
| 12:10 | Diego Morone, Università della Svizzera Italiana | Deep learning approach for the quantification of delivery to endolysosomes |
| 12:30 | Lunch |
Afternoon Session
| Starts at | Who | What |
|---|---|---|
| 15:00 | Alex Landolt, University of Bern | Microscope-in-the-Loop: Easy and Reproducible Real-Time Cell Analysis and Feedback Control based on pymmcore-plus |
| 15:20 | Pauline Mermillod, EFPL | The use of Generative Adversarial Networks to ease annotation effort in image segmentation |
| 15:40 | Daniel Sage, EPFL | AI-Assisted Segmentation of Images using Foundation Models (SAM) |
| 16:00 | Round table | Solutions for virtual bioimage analysis |
| 17:00 | Break | |
| 17:15 | General Assembly |
Posters
- Ruth Hornbachner, University of Zurich - abbott: Enabling reproducible image analysis of high-content multiplexed 3D immunofluorescence images using Fractal
- Frederic Pili, EPFL - Real-Time Region Tracking for Lightsheet Microscopy Timelapses Using Deep Learning
- Vasiliki Stergiopoulou, EPFL - PSFgenerator
- Daniela Correa Orozco, EPFL - Model-Aware Self-Supervised Learning for 3D Fluorescence-Microscopy Deconvolution
Open-Source Software Lounge (OSSL)
- Joel Lüthi, BioVisionCenter - Fractal: An open-source framework for reproducible bioimage analysis at scale using OME-Zarrs
- Roman Schwob, University of Bern - Convpaint - Interactive pixel classification using pretrained neural networks
- Pauline Mermillod, EFPL - The use of Generative Adversarial Networks to ease annotation effort in image segmentation
- Vasiliki Stergiopoulou, EPFL - PSFgenerator
- Romain Guiet, EPFL - BIOP-desktop , a versioned computer for image analysis in life sciences.
- Mallory Wittwer, EPFL - A Lightweight Toolkit for Deploying Image Analysis Algorithms as Web Services